MDTraj

Installation
New to Python
Examples
What’s New?

Trajectory Reference
Analysis Reference
Atom Selection Reference
Low-level API
OpenMM Reporters
MDTraj Utils
mdconvert

MDTraj HDF5 Format Specification

MDTraj

Baker-Hubbard Hydrogen Bond Identification
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Baker-Hubbard Hydrogen Bond Identification

embed

(hbonds.ipynb; hbonds_eval.ipynb; hbonds.py)

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